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Ioannis Kakadiaris

TitleProfessor
InstitutionUniversity of Houston
DepartmentComputer Science
Address4800 Calhoun Rd
Houston TX 77004
Phone713-743-1255
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    Collapse Research 
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    R13LM012214     (KAKADIARIS, IOANNIS A.)Aug 24, 2015 - Aug 25, 2018
    NIH/NLM
    International Workshop on Large-scale Biomedical Semantic Indexing and Question Answering (BioASQ)
    Role: Principal Investigator

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    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Paxton RJ, Zhang L, Wei C, Price D, Zhang F, Courneya KS, Kakadiaris IA. An exploratory decision tree analysis to predict physical activity compliance rates in breast cancer survivors. Ethn Health. 2017 Sep 19; 1-13. PMID: 28922931.
      View in: PubMed
    2. Mendizabal-Ruiz G, Kakadiaris IA. A physics-based intravascular ultrasound image reconstruction method for lumen segmentation. Comput Biol Med. 2016 Aug 01; 75:19-29. PMID: 27235803.
      View in: PubMed
    3. Endres BT, Bassères E, Memariani A, Chang L, Alam MJ, Vickers RJ, Kakadiaris IA, Garey KW. A novel method for imaging the pharmacological effects of antibiotic treatment on Clostridium difficile. Anaerobe. 2016 Aug; 40:10-4. PMID: 27108094.
      View in: PubMed
    4. Hernandez-Herrera P, Papadakis M, Kakadiaris IA. Multi-scale segmentation of neurons based on one-class classification. J Neurosci Methods. 2016 Jun 15; 266:94-106. PMID: 27038663.
      View in: PubMed
    5. Moutafis P, Leng M, Kakadiaris IA. An Overview and Empirical Comparison of Distance Metric Learning Methods. IEEE Trans Cybern. 2016 Feb 16. PMID: 26890943.
      View in: PubMed
    6. Zhao X, Zou J, Li H, Dellandrea E, Kakadiaris IA, Chen L. Automatic 2.5-D Facial Landmarking and Emotion Annotation for Social Interaction Assistance. IEEE Trans Cybern. 2016 Sep; 46(9):2042-55. PMID: 26316289.
      View in: PubMed
    7. Santamaría-Pang A, Hernandez-Herrera P, Papadakis M, Saggau P, Kakadiaris IA. Automatic Morphological Reconstruction of Neurons from Multiphoton and Confocal Microscopy Images Using 3D Tubular Models. Neuroinformatics. 2015 Jul; 13(3):297-320. PMID: 25631538.
      View in: PubMed
    8. Jiménez D, Labate D, Kakadiaris IA, Papadakis M. Improved automatic centerline tracing for dendritic and axonal structures. Neuroinformatics. 2015 Apr; 13(2):227-44. PMID: 25433514.
      View in: PubMed
    9. Moutafis P, Kakadiaris IA. Can We Do Better in Unimodal Biometric Systems? A Rank-Based Score Normalization Framework. IEEE Trans Cybern. 2015 Dec; 45(12):2654-67. PMID: 25546871.
      View in: PubMed
    10. Kalasekar SM, Zacharia E, Kessler N, Ducharme NA, Gustafsson JÅ, Kakadiaris IA, Bondesson M. Identification of environmental chemicals that induce yolk malabsorption in zebrafish using automated image segmentation. Reprod Toxicol. 2015 Aug 01; 55:20-9. PMID: 25462786; PMCID: PMC4420717.
      View in: PubMed, PubMed Central
    11. Le YH, Kurkure U, Kakadiaris IA. PDM-ENLOR for segmentation of mouse brain gene expression images. Med Image Anal. 2015 Feb; 20(1):19-33. PMID: 25476414.
      View in: PubMed
    12. Zhao X, Evangelopoulos G, Chu D, Shah S, Kakadiaris IA. Minimizing illumination differences for 3D to 2D face recognition using lighting maps. IEEE Trans Cybern. 2014 May; 44(5):725-36. PMID: 24759566.
      View in: PubMed
    13. Le YH, Kurkure U, Kakadiaris IA. 3D dense local point descriptors for mouse brain gene expression images. Comput Med Imaging Graph. 2014 Jul; 38(5):326-36. PMID: 24786719.
      View in: PubMed
    14. Chittajallu DR, Paragios N, Kakadiaris IA. An explicit shape-constrained MRF-based contour evolution method for 2-D medical image segmentation. IEEE J Biomed Health Inform. 2014 Jan; 18(1):120-9. PMID: 24403409.
      View in: PubMed
    15. Balocco S, Gatta C, Ciompi F, Wahle A, Radeva P, Carlier S, Unal G, Sanidas E, Mauri J, Carillo X, Kovarnik T, Wang CW, Chen HC, Exarchos TP, Fotiadis DI, Destrempes F, Cloutier G, Pujol O, Alberti M, Mendizabal-Ruiz EG, Rivera M, Aksoy T, Downe RW, Kakadiaris IA. Standardized evaluation methodology and reference database for evaluating IVUS image segmentation. Comput Med Imaging Graph. 2014 Mar; 38(2):70-90. PMID: 24012215.
      View in: PubMed
    16. Avila-Montes OC, Kurkure U, Nakazato R, Berman DS, Dey D, Kakadiaris IA. Segmentation of the thoracic aorta in noncontrast cardiac CT images. IEEE J Biomed Health Inform. 2013 Sep; 17(5):936-49. PMID: 25055373.
      View in: PubMed
    17. Perakis P, Passalis G, Theoharis T, Kakadiaris IA. 3D facial landmark detection under large yaw and expression variations. IEEE Trans Pattern Anal Mach Intell. 2013 Jul; 35(7):1552-64. PMID: 23681986.
      View in: PubMed
    18. Liu L, Commean PK, Hildebolt C, Sinacore D, Prior F, Carson JP, Kakadiaris I, Ju T. Automated, foot-bone registration using subdivision-embedded atlases for spatial mapping of bone mineral density. J Digit Imaging. 2013 Jun; 26(3):554-62. PMID: 23090209; PMCID: PMC3649048.
      View in: PubMed, PubMed Central
    19. Mendizabal-Ruiz EG, Rivera M, Kakadiaris IA. Segmentation of the luminal border in intravascular ultrasound B-mode images using a probabilistic approach. Med Image Anal. 2013 Aug; 17(6):649-70. PMID: 23490618.
      View in: PubMed
    20. Ocegueda O, Fang T, Shah SK, Kakadiaris IA. 3D Face Discriminant Analysis Using Gauss-Markov Posterior Marginals. IEEE Trans Pattern Anal Mach Intell. 2013 Mar; 35(3):728-39. PMID: 22641704.
      View in: PubMed
    21. Ruiz EM, Papaioannou TG, Vavuranakis M, Stefanadis C, Naghavi M, Kakadiaris IA. Analysis of contrast-enhanced intravascular ultrasound images for the assessment of coronary plaque neoangiogenesis: another step closer to the identification of the vulnerable plaque. Curr Pharm Des. 2012; 18(15):2207-13. PMID: 22352774.
      View in: PubMed
    22. Le YH, Kurkure U, Paragios N, Ju T, Carson JP, Kakadiaris IA. Similarity-based appearance-prior for fitting a subdivision mesh in gene expression images. Med Image Comput Comput Assist Interv. 2012; 15(Pt 1):577-84. PMID: 23285598.
      View in: PubMed
    23. Zacharia E, Bondesson M, Gustafsson JÅ, Kakadiaris IA. Segmentation of zebrafish embryonic images using a geometric atlas deformation. Conf Proc IEEE Eng Med Biol Soc. 2012; 2012:3998-4001. PMID: 23366804.
      View in: PubMed
    24. Mendizabal-Ruiz EG, Kakadiaris IA. Probabilistic segmentation of the lumen from intravascular ultrasound radio frequency data. Med Image Comput Comput Assist Interv. 2012; 15(Pt 2):454-61. PMID: 23286080.
      View in: PubMed
    25. Kurkure U, Le YH, Paragios N, Ju T, Carson JP, Kakadiaris IA. Markov Random Field-based Fitting of a Subdivision-based Geometric Atlas. Proc IEEE Int Conf Comput Vis. 2011 Nov; 2011:2540-2547. PMID: 26561477.
      View in: PubMed
    26. Kurkure U, Le YH, Paragios N, Carson JP, Ju T, Kakadiaris IA. Landmark/Image-based Deformable Registration of Gene Expression Data. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2011 Jun 20; 1089-1096. PMID: 22388864.
      View in: PubMed
    27. Zhao X, Dellandréa E, Chen L, Kakadiaris IA. Accurate landmarking of three-dimensional facial data in the presence of facial expressions and occlusions using a three-dimensional statistical facial feature model. IEEE Trans Syst Man Cybern B Cybern. 2011 Oct; 41(5):1417-28. PMID: 21622076.
      View in: PubMed
    28. Passalis G, Perakis P, Theoharis T, Kakadiaris IA. Using Facial Symmetry to Handle Pose Variations in Real-World 3D Face Recognition. IEEE Trans Pattern Anal Mach Intell. 2011 Oct; 33(10):1938-51. PMID: 21383396.
      View in: PubMed
    29. Zacharia E, Bondesson M, Riu A, Ducharme NA, Gustafsson JÅ, Kakadiaris IA. Automatic segmentation of time-lapse microscopy images depicting a live Dharma embryo. Conf Proc IEEE Eng Med Biol Soc. 2011; 2011:8082-5. PMID: 22256217.
      View in: PubMed
    30. Mendizabal-Ruiz EG, Biros G, Kakadiaris IA. Towards extra-luminal blood detection from intravascular ultrasound radio frequency data. Med Image Comput Comput Assist Interv. 2011; 14(Pt 1):396-403. PMID: 22003642.
      View in: PubMed
    31. Enlow MA, Ju T, Kakadiaris IA, Carson JP. Lossless 3-D reconstruction and registration of semi-quantitative gene expression data in the mouse brain. Conf Proc IEEE Eng Med Biol Soc. 2011; 2011:8086-9. PMID: 22256218; PMCID: PMC3297624.
      View in: PubMed, PubMed Central
    32. Kindle LM, Kakadiaris IA, Ju T, Carson JP. A semiautomated approach for artefact removal in serial tissue cryosections. J Microsc. 2011 Feb; 241(2):200-6. PMID: 21118219; PMCID: PMC3297619.
      View in: PubMed, PubMed Central
    33. Chen D, Chittajallu DR, Passalis G, Kakadiaris IA. Computational tools for quantitative breast morphometry based on 3D scans. Ann Biomed Eng. 2010 May; 38(5):1703-18. PMID: 20300850.
      View in: PubMed
    34. Brunner G, Chittajallu DR, Kurkure U, Kakadiaris IA. Toward the automatic detection of coronary artery calcification in non-contrast computed tomography data. Int J Cardiovasc Imaging. 2010 Oct; 26(7):829-38. PMID: 20232154.
      View in: PubMed
    35. Kurkure U, Chittajallu DR, Brunner G, Le YH, Kakadiaris IA. A supervised classification-based method for coronary calcium detection in non-contrast CT. Int J Cardiovasc Imaging. 2010 Oct; 26(7):817-28. PMID: 20229312.
      View in: PubMed
    36. Kakadiaris IA, Santamaría-Pang A, Pednekar A. Functional morphology analysis of the left anterior descending coronary artery in EBCT images. IEEE Trans Biomed Eng. 2010 Aug; 57(8):1886-96. PMID: 20176530.
      View in: PubMed
    37. Dey D, Wong ND, Tamarappoo B, Nakazato R, Gransar H, Cheng VY, Ramesh A, Kakadiaris I, Germano G, Slomka PJ, Berman DS. Computer-aided non-contrast CT-based quantification of pericardial and thoracic fat and their associations with coronary calcium and Metabolic Syndrome. Atherosclerosis. 2010 Mar; 209(1):136-41. PMID: 19748623; PMCID: PMC2830349.
      View in: PubMed, PubMed Central
    38. Carson J, Ju T, Bello M, Thaller C, Warren J, Kakadiaris IA, Chiu W, Eichele G. Automated pipeline for atlas-based annotation of gene expression patterns: application to postnatal day 7 mouse brain. Methods. 2010 Feb; 50(2):85-95. PMID: 19698790; PMCID: PMC2818703.
      View in: PubMed, PubMed Central
    39. Ju T, Carson J, Liu L, Warren J, Bello M, Kakadiaris I. Subdivision meshes for organizing spatial biomedical data. Methods. 2010 Feb; 50(2):70-6. PMID: 19664714; PMCID: PMC2818072.
      View in: PubMed, PubMed Central
    40. Mendizabal-Ruiz EG, Biros G, Kakadiaris IA. An inverse scattering algorithm for the segmentation of the luminal border on intravascular ultrasound data. Med Image Comput Comput Assist Interv. 2009; 12(Pt 2):885-92. PMID: 20426195.
      View in: PubMed
    41. Kakadiaris IA, Kurkure U, Mendizabal-Ruiz EG, Naghavi M. Towards cardiovascular risk stratification using imaging data. Conf Proc IEEE Eng Med Biol Soc. 2009; 2009:1918-21. PMID: 19965147.
      View in: PubMed
    42. Chittajallu DR, Balanca P, Kakadiaris IA. Automatic delineation of the inner thoracic region in non-contrast CT data. Conf Proc IEEE Eng Med Biol Soc. 2009; 2009:3569-72. PMID: 19963591.
      View in: PubMed
    43. Santamaria-Pang A, Bildea TS, Tan S, Kakadiaris IA. Denoising for 3-d photon-limited imaging data using nonseparable filterbanks. IEEE Trans Image Process. 2008 Dec; 17(12):2312-23. PMID: 19004704; PMCID: PMC2741299.
      View in: PubMed, PubMed Central
    44. Sanidas EA, Vavuranakis M, Papaioannou TG, Kakadiaris IA, Carlier S, Syros G, Dangas G, Stefanadis C. Study of atheromatous plaque using intravascular ultrasound. Hellenic J Cardiol. 2008 Nov-Dec; 49(6):415-21. PMID: 19110928.
      View in: PubMed
    45. Ostrom MP, Gopal A, Ahmadi N, Nasir K, Yang E, Kakadiaris I, Flores F, Mao SS, Budoff MJ. Mortality incidence and the severity of coronary atherosclerosis assessed by computed tomography angiography. J Am Coll Cardiol. 2008 Oct 14; 52(16):1335-43. PMID: 18929245.
      View in: PubMed
    46. Losavio BE, Liang Y, Santamaría-Pang A, Kakadiaris IA, Colbert CM, Saggau P. Live neuron morphology automatically reconstructed from multiphoton and confocal imaging data. J Neurophysiol. 2008 Oct; 100(4):2422-9. PMID: 18701753.
      View in: PubMed
    47. Papaioannou TG, Vavuranakis M, Androulakis A, Lazaros G, Kakadiaris I, Vlaseros I, Naghavi M, Kallikazaros I, Stefanadis C. In-vivo imaging of carotid plaque neoangiogenesis with contrast-enhanced harmonic ultrasound. Int J Cardiol. 2009 May 29; 134(3):e110-2. PMID: 18495267.
      View in: PubMed
    48. O'Malley SM, Granada JF, Carlier S, Naghavi M, Kakadiaris IA. Image-based gating of intravascular ultrasound pullback sequences. IEEE Trans Inf Technol Biomed. 2008 May; 12(3):299-306. PMID: 18693497.
      View in: PubMed
    49. Unal G, Slabaugh G, Kakadiaris IA, Tannenbaum A. Introduction to the special section on computer vision for intravascular and intracardiac imaging. IEEE Trans Inf Technol Biomed. 2008 May; 12(3):273-6. PMID: 18693494; PMCID: PMC3646520.
      View in: PubMed, PubMed Central
    50. Tan S, Jiao L, Kakadiaris IA. Wavelet-based Bayesian image estimation: from marginal and bivariate prior models to multivariate prior models. IEEE Trans Image Process. 2008 Apr; 17(4):469-81. PMID: 18390356.
      View in: PubMed
    51. Vavuranakis M, Kakadiaris IA, O'Malley SM, Papaioannou TG, Sanidas EA, Naghavi M, Carlier S, Tousoulis D, Stefanadis C. A new method for assessment of plaque vulnerability based on vasa vasorum imaging, by using contrast-enhanced intravascular ultrasound and differential image analysis. Int J Cardiol. 2008 Oct 30; 130(1):23-9. PMID: 18068834.
      View in: PubMed
    52. Brunner G, Kurkure U, Chittajallu DR, Yalamanchili RP, Kakadiaris IA. Toward unsupervised classification of calcified arterial lesions. Med Image Comput Comput Assist Interv. 2008; 11(Pt 1):144-52. PMID: 18979742.
      View in: PubMed
    53. Vavuranakis M, Papaioannou TG, Kakadiaris IA, O'Malley SM, Naghavi M, Filis K, Sanidas EA, Papalois A, Stamatopoulos I, Stefanadis C. Detection of perivascular blood flow in vivo by contrast-enhanced intracoronary ultrasonography and image analysis: an animal study. Clin Exp Pharmacol Physiol. 2007 Dec; 34(12):1319-23. PMID: 17973875.
      View in: PubMed
    54. Vavuranakis M, Kakadiaris IA, Papaioannou TG, O'Malley SM, Carlier S, Naghavi M, Stefanadis C. Contrast-enhanced intravascular ultrasound: combining morphology with activity-based assessment of plaque vulnerability. Expert Rev Cardiovasc Ther. 2007 Sep; 5(5):917-25. PMID: 17867921.
      View in: PubMed
    55. Bello M, Ju T, Carson J, Warren J, Chiu W, Kakadiaris IA. Learning-based segmentation framework for tissue images containing gene expression data. IEEE Trans Med Imaging. 2007 May; 26(5):728-44. PMID: 17518066.
      View in: PubMed
    56. Kakadiaris IA, Passalis G, Toderici G, Murtuza MN, Lu Y, Karampatziakis N, Theoharis T. Three-dimensional face recognition in the presence of facial expressions: an annotated deformable model approach. IEEE Trans Pattern Anal Mach Intell. 2007 Apr; 29(4):640-9. PMID: 17299221.
      View in: PubMed
    57. Passalis G, Kakadiaris IA, Theoharis T. Intraclass retrieval of nonrigid 3D objects: application to face recognition. IEEE Trans Pattern Anal Mach Intell. 2007 Feb; 29(2):218-29. PMID: 17170476.
      View in: PubMed
    58. Santamaría-Pang A, Colbert CM, Saggau P, Kakadiaris IA. Automatic centerline extraction of irregular tubular structures using probability volumes from multiphoton imaging. Med Image Comput Comput Assist Interv. 2007; 10(Pt 2):486-94. PMID: 18044604.
      View in: PubMed
    59. O'Malley SM, Naghavi M, Kakadiaris IA. One-class acoustic characterization applied to blood detection in IVUS. Med Image Comput Comput Assist Interv. 2007; 10(Pt 1):202-9. PMID: 18051060.
      View in: PubMed
    60. Pednekar A, Kurkure U, Muthupillai R, Flamm S, Kakadiaris IA. Automated left ventricular segmentation in cardiac MRI. IEEE Trans Biomed Eng. 2006 Jul; 53(7):1425-8. PMID: 16830947.
      View in: PubMed
    61. Velazquez-Muriel JA, Valle M, Santamaría-Pang A, Kakadiaris IA, Carazo JM. Flexible fitting in 3D-EM guided by the structural variability of protein superfamilies. Structure. 2006 Jul; 14(7):1115-26. PMID: 16843893.
      View in: PubMed
    62. Pednekar AS, Kakadiaris IA. Image segmentation based on fuzzy connectedness using dynamic weights. IEEE Trans Image Process. 2006 Jun; 15(6):1555-62. PMID: 16764280.
      View in: PubMed
    63. Pednekar AS, Muthupillai R, Lenge VV, Kakadiaris IA, Flamm SD. Automatic identification of the left ventricle in cardiac cine-MR images: dual-contrast cluster analysis and scout-geometry approaches. J Magn Reson Imaging. 2006 May; 23(5):641-51. PMID: 16586424.
      View in: PubMed
    64. Shen L, Papadakis M, Kakadiaris IA, Konstantinidis I, Kouri D, Hoffman D. Image denoising using a tight frame. IEEE Trans Image Process. 2006 May; 15(5):1254-63. PMID: 16671305.
      View in: PubMed
    65. Ju T, Warren J, Carson J, Bello M, Kakadiaris I, Chiu W, Thaller C, Eichele G. 3D volume reconstruction of a mouse brain from histological sections using warp filtering. J Neurosci Methods. 2006 Sep 30; 156(1-2):84-100. PMID: 16580732.
      View in: PubMed
    66. Losavio BE, Reddy GD, Colbert CM, Kakadiaris IA, Saggau P. Combining optical imaging and computational modeling to analyze structure and function of living neurons. Conf Proc IEEE Eng Med Biol Soc. 2006; 1:668-70. PMID: 17946849.
      View in: PubMed
    67. Bandekar AN, Naghavi M, Kakadiaris IA. Automated pericardial fat quantification in CT data. Conf Proc IEEE Eng Med Biol Soc. 2006; 1:932-5. PMID: 17946011.
      View in: PubMed
    68. Vavuranakis M, Kakadiaris IA, O'Malley SM, Stefanadis C, Vaina S, Drakopoulou M, Mitropoulos I, Carlier S, Naghavi M. Images in cardiovascular medicine. Detection of luminal-intimal border and coronary wall enhancement in intravascular ultrasound imaging after injection of microbubbles and simultaneous sonication with transthoracic echocardiography. Circulation. 2005 Jul 05; 112(1):e1-2. PMID: 15998686.
      View in: PubMed
    69. Carlier S, Kakadiaris IA, Dib N, Vavuranakis M, O'Malley SM, Gul K, Hartley CJ, Metcalfe R, Mehran R, Stefanadis C, Falk E, Stone G, Leon M, Naghavi M. Vasa vasorum imaging: a new window to the clinical detection of vulnerable atherosclerotic plaques. Curr Atheroscler Rep. 2005 Mar; 7(2):164-9. PMID: 15727733.
      View in: PubMed
    70. Bello M, Ju T, Warren J, Carson J, Chiu W, Thaller C, Eichele G, Kakadiaris IA. Hybrid segmentation framework for tissue images containing gene expression data. Med Image Comput Comput Assist Interv. 2005; 8(Pt 1):254-61. PMID: 16685853.
      View in: PubMed
    71. O'Malley SM, Vavuranakis M, Naghavi M, Kakadiaris IA. Intravascular ultrasound-based imaging of vasa vasorum for the detection of vulnerable atherosclerotic plaque. Med Image Comput Comput Assist Interv. 2005; 8(Pt 1):343-51. PMID: 16685864.
      View in: PubMed
    72. Konstantinidis I, Santamaria-Pang A, Kakadiaris I. Frames-Based Denoising in 3D Confocal Microscopy Imaging. Conf Proc IEEE Eng Med Biol Soc. 2005; 1:290-3. PMID: 17282170.
      View in: PubMed
    73. Bandekar A, Naghavi M, Kakadiaris I. Performance Evaluation of Abdominal Fat Burden Quantification in CT. Conf Proc IEEE Eng Med Biol Soc. 2005; 3:3280-3. PMID: 17282946.
      View in: PubMed
    74. Toderici GD, Esquivel A, Li HK, Kakadiaris IA. Evaluation of variability and significance of fundus camera lens distortion. Conf Proc IEEE Eng Med Biol Soc. 2004; 2:1497-500. PMID: 17271980.
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    75. Carson JP, Ju T, Thaller C, Warren J, Bello M, Kakadiaris I, Chiu W, Eichele G. Automated characterization of gene expression patterns with an atlas of the mouse brain. Conf Proc IEEE Eng Med Biol Soc. 2004; 4:2917-20. PMID: 17270888.
      View in: PubMed
    76. Uehara C, Colbert C, Saggau P, Kakadiaris I. Towards automatic reconstruction of dendrite morphology from live neurons. Conf Proc IEEE Eng Med Biol Soc. 2004; 3:1798-801. PMID: 17272057.
      View in: PubMed
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