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George Fox

TitleProfessor
InstitutionUniversity of Houston
DepartmentBiology
Address4800 Calhoun Rd
Houston TX 77004
Phone713-743-8363
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    Collapse Research 
    Collapse research activities and funding
    R01GM037655     (FOX, GEORGE E)Jul 1, 1987 - Jun 30, 1990
    NIH/NIGMS
    IDENTIFICATION OF CANDIDATE TERTIARY INTERACTIONS--RRNA
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Venkateswaran K, Checinska Sielaff A, Ratnayake S, Pope RK, Blank TE, Stepanov VG, Fox GE, van Tongeren SP, Torres C, Allen J, Jaing C, Pierson D, Perry J, Koren S, Phillippy A, Klubnik J, Treangen TJ, Rosovitz MJ, Bergman NH. Draft Genome Sequences from a Novel Clade of Bacillus cereus Sensu Lato Strains, Isolated from the International Space Station. Genome Announc. 2017 Aug 10; 5(32). PMID: 28798168.
      View in: PubMed
    2. Tirumalai MR, Karouia F, Tran Q, Stepanov VG, Bruce RJ, Ott CM, Pierson DL, Fox GE. The adaptation of Escherichia coli cells grown in simulated microgravity for an extended period is both phenotypic and genomic. NPJ Microgravity. 2017; 3:15. PMID: 28649637.
      View in: PubMed
    3. Stepanov VG, Xiao Y, Lopez AJ, Roberts DJ, Fox GE. Draft Genome Sequence of Marinobacter sp. Strain P4B1, an Electrogenic Perchlorate-Reducing Strain Isolated from a Long-Term Mixed Enrichment Culture of Marine Bacteria. Genome Announc. 2016 Jan 21; 4(1). PMID: 26798109; PMCID: PMC4722276.
      View in: PubMed, PubMed Central
    4. Paci M, Fox GE. Centers of motion associated with EF-Tu binding to the ribosome. RNA Biol. 2016 May 03; 13(5):524-30. PMID: 26786136; PMCID: PMC4962796 [Available on 01/19/17].
      View in: PubMed, PubMed Central
    5. Petrov AS, Gulen B, Norris AM, Kovacs NA, Bernier CR, Lanier KA, Fox GE, Harvey SC, Wartell RM, Hud NV, Williams LD. History of the ribosome and the origin of translation. Proc Natl Acad Sci U S A. 2015 Dec 15; 112(50):15396-401. PMID: 26621738; PMCID: PMC4687566.
      View in: PubMed, PubMed Central
    6. Checinska A, Probst AJ, Vaishampayan P, White JR, Kumar D, Stepanov VG, Fox GE, Nilsson HR, Pierson DL, Perry J, Venkateswaran K. Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities. Microbiome. 2015 Oct 27; 3:50. PMID: 26502721; PMCID: PMC4624184.
      View in: PubMed, PubMed Central
    7. Yerrapragada S, Shukla A, Hallsworth-Pepin K, Choi K, Wollam A, Clifton S, Qin X, Muzny D, Raghuraman S, Ashki H, Uzman A, Highlander SK, Fryszczyn BG, Fox GE, Tirumalai MR, Liu Y, Kim S, Kehoe DM, Weinstock GM. Extreme Sensory Complexity Encoded in the 10-Megabase Draft Genome Sequence of the Chromatically Acclimating Cyanobacterium Tolypothrix sp. PCC 7601. Genome Announc. 2015 May 07; 3(3). PMID: 25953173; PMCID: PMC4424289.
      View in: PubMed, PubMed Central
    8. Paci M, Fox GE. Major centers of motion in the large ribosomal RNAs. Nucleic Acids Res. 2015 May 19; 43(9):4640-9. PMID: 25870411; PMCID: PMC4482067.
      View in: PubMed, PubMed Central
    9. Forsman Z, Wellington GM, Fox GE, Toonen RJ. Clues to unraveling the coral species problem: distinguishing species from geographic variation in Porites across the Pacific with molecular markers and microskeletal traits. PeerJ. 2015; 3:e751. PMID: 25674364; PMCID: PMC4319317.
      View in: PubMed, PubMed Central
    10. Stepanov VG, Fox GE. In Vivo Production of Small Recombinant RNAs Embedded in a 5S rRNA-Derived Protective Scaffold. Methods Mol Biol. 2015; 1316:45-65. PMID: 25967052.
      View in: PubMed
    11. Stepanov VG, Xiao Y, Tran Q, Rojas M, Willson RC, Fofanov Y, Fox GE, Roberts DJ. The presence of nitrate dramatically changed the predominant microbial community in perchlorate degrading cultures under saline conditions. BMC Microbiol. 2014 Sep 07; 14:225. PMID: 25194715; PMCID: PMC4174249.
      View in: PubMed, PubMed Central
    12. Petrov AS, Bernier CR, Hsiao C, Norris AM, Kovacs NA, Waterbury CC, Stepanov VG, Harvey SC, Fox GE, Wartell RM, Hud NV, Williams LD. Evolution of the ribosome at atomic resolution. Proc Natl Acad Sci U S A. 2014 Jul 15; 111(28):10251-6. PMID: 24982194; PMCID: PMC4104869.
      View in: PubMed, PubMed Central
    13. Stepanov VG, Vaishampayan P, Venkateswaran K, Fox GE. Draft Genome Sequence of Deinococcus phoenicis, a Novel Strain Isolated during the Phoenix Lander Spacecraft Assembly. Genome Announc. 2014 Apr 24; 2(2). PMID: 24762934; PMCID: PMC3999491.
      View in: PubMed, PubMed Central
    14. Sripakdeevong P, Cevec M, Chang AT, Erat MC, Ziegeler M, Zhao Q, Fox GE, Gao X, Kennedy SD, Kierzek R, Nikonowicz EP, Schwalbe H, Sigel RK, Turner DH, Das R. Structure determination of noncanonical RNA motifs guided by ¹H NMR chemical shifts. Nat Methods. 2014 Apr; 11(4):413-6. PMID: 24584194; PMCID: PMC3985481.
      View in: PubMed, PubMed Central
    15. Petrov AS, Bernier CR, Gulen B, Waterbury CC, Hershkovits E, Hsiao C, Harvey SC, Hud NV, Fox GE, Wartell RM, Williams LD. Secondary structures of rRNAs from all three domains of life. PLoS One. 2014; 9(2):e88222. PMID: 24505437; PMCID: PMC3914948.
      View in: PubMed, PubMed Central
    16. Fox GE. Carl R. Woese, 1928-2012. Astrobiology. 2013 Dec; 13(12):1201-2. PMID: 24341461.
      View in: PubMed
    17. Sapp J, Fox GE. The singular quest for a universal tree of life. Microbiol Mol Biol Rev. 2013 Dec; 77(4):541-50. PMID: 24296570; PMCID: PMC3973382.
      View in: PubMed, PubMed Central
    18. Rivas M, Tran Q, Fox GE. Nanometer scale pores similar in size to the entrance of the ribosomal exit cavity are a common feature of large RNAs. RNA. 2013 Oct; 19(10):1349-54. PMID: 23940386; PMCID: PMC3854525.
      View in: PubMed, PubMed Central
    19. Tirumalai MR, Fox GE. An ICEBs1-like element may be associated with the extreme radiation and desiccation resistance of Bacillus pumilus SAFR-032 spores. Extremophiles. 2013 Sep; 17(5):767-74. PMID: 23812891.
      View in: PubMed
    20. Petrov AS, Bernier CR, Hershkovits E, Xue Y, Waterbury CC, Hsiao C, Stepanov VG, Gaucher EA, Grover MA, Harvey SC, Hud NV, Wartell RM, Fox GE, Williams LD. Secondary structure and domain architecture of the 23S and 5S rRNAs. Nucleic Acids Res. 2013 Aug; 41(15):7522-35. PMID: 23771137; PMCID: PMC3753638.
      View in: PubMed, PubMed Central
    21. Tirumalai MR, Rastogi R, Zamani N, O'Bryant Williams E, Allen S, Diouf F, Kwende S, Weinstock GM, Venkateswaran KJ, Fox GE. Candidate genes that may be responsible for the unusual resistances exhibited by Bacillus pumilus SAFR-032 spores. PLoS One. 2013; 8(6):e66012. PMID: 23799069; PMCID: PMC3682946.
      View in: PubMed, PubMed Central
    22. Zhao Q, Huang HC, Nagaswamy U, Xia Y, Gao X, Fox GE. UNAC tetraloops: to what extent do they mimic GNRA tetraloops? Biopolymers. 2012 Aug; 97(8):617-28. PMID: 22605553.
      View in: PubMed
    23. Gijavanekar C, Drabek R, Soni M, Jackson GW, Strych U, Fox GE, Fofanov Y, Willson RC. Detection and typing of viruses using broadly sensitive cocktail-PCR and mass spectrometric cataloging: demonstration with dengue virus. J Mol Diagn. 2012 Jul; 14(4):402-7. PMID: 22579629; PMCID: PMC3391419.
      View in: PubMed, PubMed Central
    24. Fox GE, Tran Q, Yonath A. An exit cavity was crucial to the polymerase activity of the early ribosome. Astrobiology. 2012 Jan; 12(1):57-60. PMID: 22191510; PMCID: PMC3264961.
      View in: PubMed, PubMed Central
    25. Gijavanekar C, Strych U, Fofanov Y, Fox GE, Willson RC. Rare target enrichment for ultrasensitive PCR detection using cot-rehybridization and duplex-specific nuclease. Anal Biochem. 2012 Feb 01; 421(1):81-5. PMID: 22155054.
      View in: PubMed
    26. Dasgupta I, Gao X, Fox GE. Structural properties of DNA oligomers containing (GACX)(n) and (GAXC)(n) tandem repeats. Biopolymers. 2012 Mar; 97(3):155-64. PMID: 21953019.
      View in: PubMed
    27. Lu Q, Fox GE. Resurrection of an ancestral 5S rRNA. BMC Evol Biol. 2011 Jul 22; 11:218. PMID: 21781330; PMCID: PMC3161009.
      View in: PubMed, PubMed Central
    28. Gijavanekar C, Añez-Lingerfelt M, Feng C, Putonti C, Fox GE, Sabo A, Fofanov Y, Willson RC. PCR detection of nearly any dengue virus strain using a highly sensitive primer 'cocktail'. FEBS J. 2011 May; 278(10):1676-87. PMID: 21410643.
      View in: PubMed
    29. Nayar M, Fox GE. Defining 5S rRNA structure space: point mutation data can be used to predict the phenotype of multichange variants. Mol Biol Evol. 2011 Sep; 28(9):2629-36. PMID: 21470967.
      View in: PubMed
    30. Kanakaraj I, Jewell DL, Murphy JC, Fox GE, Willson RC. Removal of PCR error products and unincorporated primers by metal-chelate affinity chromatography. PLoS One. 2011 Jan 14; 6(1):e14512. PMID: 21264292; PMCID: PMC3021510.
      View in: PubMed, PubMed Central
    31. Liu Y, Stepanov VG, Strych U, Willson RC, Jackson GW, Fox GE. DNAzyme-mediated recovery of small recombinant RNAs from a 5S rRNA-derived chimera expressed in Escherichia coli. BMC Biotechnol. 2010 Dec 06; 10:85. PMID: 21134283; PMCID: PMC3019158.
      View in: PubMed, PubMed Central
    32. Zhu D, Vaishampayan PA, Venkateswaran K, Fox GE. STITCH: algorithm to splice, trim, identify, track, and capture the uniqueness of 16S rRNAs sequence pairs using public or in-house database. Microb Ecol. 2011 Apr; 61(3):669-75. PMID: 21113709.
      View in: PubMed
    33. Fox GE. Origin and evolution of the ribosome. Cold Spring Harb Perspect Biol. 2010 Sep; 2(9):a003483. PMID: 20534711; PMCID: PMC2926754.
      View in: PubMed, PubMed Central
    34. Rastogi R, Wu M, Dasgupta I, Fox GE. Visualization of ribosomal RNA operon copy number distribution. BMC Microbiol. 2009 Sep 25; 9:208. PMID: 19781086; PMCID: PMC2761929.
      View in: PubMed, PubMed Central
    35. Wang J, Dasgupta I, Fox GE. Many nonuniversal archaeal ribosomal proteins are found in conserved gene clusters. Archaea. 2009 Apr 28; 2(4):241-51. PMID: 19478915; PMCID: PMC2686390.
      View in: PubMed, PubMed Central
    36. Warmflash D, Chu H, Siefert J, Fox GE. Life detection using glucose and tetrasaccharide enantiomer pairs. Astrobiology. 2009 Apr; 9(3):297-303. PMID: 19499996.
      View in: PubMed
    37. Zhang X, Potty AS, Jackson GW, Stepanov V, Tang A, Liu Y, Kourentzi K, Strych U, Fox GE, Willson RC. Engineered 5S ribosomal RNAs displaying aptamers recognizing vascular endothelial growth factor and malachite green. J Mol Recognit. 2009 Mar-Apr; 22(2):154-61. PMID: 19195013.
      View in: PubMed
    38. Zuo G, Roberts DJ, Lehman SG, Jackson GW, Fox GE, Willson RC. Molecular assessment of salt-tolerant, perchlorate- and nitrate-reducing microbial cultures. Water Sci Technol. 2009; 60(7):1745-56. PMID: 19809137.
      View in: PubMed
    39. Yerrapragada S, Siefert JL, Fox GE. Horizontal gene transfer in cyanobacterial signature genes. Methods Mol Biol. 2009; 532:339-66. PMID: 19271195.
      View in: PubMed
    40. Zhang ZD, Nayar M, Ammons D, Rampersad J, Fox GE. Rapid in vivo exploration of a 5S rRNA neutral network. J Microbiol Methods. 2009 Feb; 76(2):181-7. PMID: 19041908.
      View in: PubMed
    41. Añez-Lingerfelt M, Fox GE, Willson RC. Reduction of DNA contamination in RNA samples for reverse transcription-polymerase chain reaction using selective precipitation by compaction agents. Anal Biochem. 2009 Jan 01; 384(1):79-85. PMID: 18831957.
      View in: PubMed
    42. Jackson GW, McNichols RJ, Fox GE, Willson RC. Toward universal flavivirus identification by mass cataloging. J Mol Diagn. 2008 Mar; 10(2):135-41. PMID: 18258926; PMCID: PMC2259467.
      View in: PubMed, PubMed Central
    43. Highlander SK, Hultén KG, Qin X, Jiang H, Yerrapragada S, Mason EO, Shang Y, Williams TM, Fortunov RM, Liu Y, Igboeli O, Petrosino J, Tirumalai M, Uzman A, Fox GE, Cardenas AM, Muzny DM, Hemphill L, Ding Y, Dugan S, Blyth PR, Buhay CJ, Dinh HH, Hawes AC, Holder M, Kovar CL, Lee SL, Liu W, Nazareth LV, Wang Q, Zhou J, Kaplan SL, Weinstock GM. Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus. BMC Microbiol. 2007 Nov 06; 7:99. PMID: 17986343; PMCID: PMC2222628.
      View in: PubMed, PubMed Central
    44. Zhu D, Fox GE, Chakravarty S. RECOVIR: an application package to automatically identify some single stranded RNA viruses using capsid protein residues that uniquely distinguish among these viruses. BMC Bioinformatics. 2007 Oct 10; 8:379. PMID: 17927830; PMCID: PMC2174958.
      View in: PubMed, PubMed Central
    45. Gioia J, Yerrapragada S, Qin X, Jiang H, Igboeli OC, Muzny D, Dugan-Rocha S, Ding Y, Hawes A, Liu W, Perez L, Kovar C, Dinh H, Lee S, Nazareth L, Blyth P, Holder M, Buhay C, Tirumalai MR, Liu Y, Dasgupta I, Bokhetache L, Fujita M, Karouia F, Eswara Moorthy P, Siefert J, Uzman A, Buzumbo P, Verma A, Zwiya H, McWilliams BD, Olowu A, Clinkenbeard KD, Newcombe D, Golebiewski L, Petrosino JF, Nicholson WL, Fox GE, Venkateswaran K, Highlander SK, Weinstock GM. Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032. PLoS One. 2007 Sep 26; 2(9):e928. PMID: 17895969; PMCID: PMC1976550.
      View in: PubMed, PubMed Central
    46. Añez M, Putonti C, Fox GE, Fofanov Y, Willson RC. Exhaustive computational identification of pathogen sequences far-distant from background genomes: Identification and experimental verification of human-blind dengue PCR primers. J Biotechnol. 2008 Feb 01; 133(3):267-76. PMID: 17996971.
      View in: PubMed
    47. Karpathy SE, Qin X, Gioia J, Jiang H, Liu Y, Petrosino JF, Yerrapragada S, Fox GE, Haake SK, Weinstock GM, Highlander SK. Genome sequence of Fusobacterium nucleatum subspecies polymorphum - a genetically tractable fusobacterium. PLoS One. 2007 Aug 01; 2(7):e659. PMID: 17668047; PMCID: PMC1924603.
      View in: PubMed, PubMed Central
    48. Stepanov VG, Fox GE. Stress-driven in vivo selection of a functional mini-gene from a randomized DNA library expressing combinatorial peptides in Escherichia coli. Mol Biol Evol. 2007 Jul; 24(7):1480-91. PMID: 17420171.
      View in: PubMed
    49. Larios-Sanz M, Kourentzi KD, Warmflash D, Jones J, Pierson DL, Willson RC, Fox GE. 16S rRNA beacons for bacterial monitoring during human space missions. Aviat Space Environ Med. 2007 Apr; 78(4 Suppl):A43-7. PMID: 17511298.
      View in: PubMed
    50. Warmflash D, Larios-Sanz M, Jones J, Fox GE, McKay DS. Biohazard potential of putative Martian organisms during missions to Mars. Aviat Space Environ Med. 2007 Apr; 78(4 Suppl):A79-88. PMID: 17511302.
      View in: PubMed
    51. Tucker DL, Ott CM, Huff S, Fofanov Y, Pierson DL, Willson RC, Fox GE. Characterization of Escherichia coli MG1655 grown in a low-shear modeled microgravity environment. BMC Microbiol. 2007 Mar 07; 7:15. PMID: 17343762; PMCID: PMC1852313.
      View in: PubMed, PubMed Central
    52. Gioia J, Qin X, Jiang H, Clinkenbeard K, Lo R, Liu Y, Fox GE, Yerrapragada S, McLeod MP, McNeill TZ, Hemphill L, Sodergren E, Wang Q, Muzny DM, Homsi FJ, Weinstock GM, Highlander SK. The genome sequence of Mannheimia haemolytica A1: insights into virulence, natural competence, and Pasteurellaceae phylogeny. J Bacteriol. 2006 Oct; 188(20):7257-66. PMID: 17015664; PMCID: PMC1636238.
      View in: PubMed, PubMed Central
    53. Petrosino JF, Xiang Q, Karpathy SE, Jiang H, Yerrapragada S, Liu Y, Gioia J, Hemphill L, Gonzalez A, Raghavan TM, Uzman A, Fox GE, Highlander S, Reichard M, Morton RJ, Clinkenbeard KD, Weinstock GM. Chromosome rearrangement and diversification of Francisella tularensis revealed by the type B (OSU18) genome sequence. J Bacteriol. 2006 Oct; 188(19):6977-85. PMID: 16980500; PMCID: PMC1595524.
      View in: PubMed, PubMed Central
    54. Hury J, Nagaswamy U, Larios-Sanz M, Fox GE. Ribosome origins: the relative age of 23S rRNA Domains. Orig Life Evol Biosph. 2006 Aug; 36(4):421-9. PMID: 16972151.
      View in: PubMed
    55. Putonti C, Luo Y, Katili C, Chumakov S, Fox GE, Graur D, Fofanov Y. A computational tool for the genomic identification of regions of unusual compositional properties and its utilization in the detection of horizontally transferred sequences. Mol Biol Evol. 2006 Oct; 23(10):1863-8. PMID: 16829541.
      View in: PubMed
    56. Fu JY, Potty AS, Fox GE, Willson RC. Water-elutability of nucleic acids from metal-chelate affinity adsorbents: enhancement by control of surface charge density. J Mol Recognit. 2006 Jul-Aug; 19(4):348-53. PMID: 16865664.
      View in: PubMed
    57. Jackson GW, McNichols RJ, Fox GE, Willson RC. Bacterial genotyping by 16S rRNA mass cataloging. BMC Bioinformatics. 2006 Jun 23; 7:321. PMID: 16796754; PMCID: PMC1522025.
      View in: PubMed, PubMed Central
    58. Potty AS, Fu JY, Balan S, Haymore BL, Hill DJ, Fox GE, Willson RC. Neutral additives enhance the metal-chelate affinity adsorption of nucleic acids: role of water activity. J Chromatogr A. 2006 May 19; 1115(1-2):88-92. PMID: 16600263.
      View in: PubMed
    59. Zhang Z, Jackson GW, Fox GE, Willson RC. Microbial identification by mass cataloging. BMC Bioinformatics. 2006 Mar 08; 7:117. PMID: 16524471; PMCID: PMC1488874.
      View in: PubMed, PubMed Central
    60. Murphy JC, Cano T, Fox GE, Willson RC. Compaction agent protection of nucleic acids during mechanical lysis. Biotechnol Prog. 2006 Mar-Apr; 22(2):519-22. PMID: 16599571.
      View in: PubMed
    61. Putonti C, Chumakov S, Mitra R, Fox GE, Willson RC, Fofanov Y. Human-blind probes and primers for dengue virus identification. FEBS J. 2006 Jan; 273(2):398-408. PMID: 16403026.
      View in: PubMed
    62. Chumakov S, Belapurkar C, Putonti C, Li TB, Pettitt BM, Fox GE, Willson RC, Fofanov Y. The theoretical basis of universal identification systems for bacteria and viruses. J Biol Phys Chem. 2005 Dec 01; 5(4):121-128. PMID: 20428334.
      View in: PubMed
    63. Cano T, Murphy JC, Fox GE, Willson RC. Separation of genomic DNA from plasmid DNA by selective renaturation with immobilized metal affinity capture. Biotechnol Prog. 2005 Sep-Oct; 21(5):1472-7. PMID: 16209553.
      View in: PubMed
    64. Tucker DL, Karouia F, Wang J, Luo Y, Li TB, Willson RC, Fofanov Y, Fox GE. Effect of an artificial RNA marker on gene expression in Escherichia coli. Appl Environ Microbiol. 2005 Jul; 71(7):4156-9. PMID: 16000839; PMCID: PMC1168998.
      View in: PubMed, PubMed Central
    65. Zhao Q, Nagaswamy U, Lee H, Xia Y, Huang HC, Gao X, Fox GE. NMR structure and Mg2+ binding of an RNA segment that underlies the L7/L12 stalk in the E.coli 50S ribosomal subunit. Nucleic Acids Res. 2005; 33(10):3145-53. PMID: 15939932; PMCID: PMC1143578.
      View in: PubMed, PubMed Central
    66. Huang HC, Nagaswamy U, Fox GE. The application of cluster analysis in the intercomparison of loop structures in RNA. RNA. 2005 Apr; 11(4):412-23. PMID: 15769871; PMCID: PMC1370731.
      View in: PubMed, PubMed Central
    67. Forsman ZH, Lednicky JA, Fox GE, Willson RC, White ZS, Halvorson SJ, Wong C, Lewis AM, Butel JS. Phylogenetic analysis of polyomavirus simian virus 40 from monkeys and humans reveals genetic variation. J Virol. 2004 Sep; 78(17):9306-16. PMID: 15308725; PMCID: PMC506915.
      View in: PubMed, PubMed Central
    68. McLeod MP, Qin X, Karpathy SE, Gioia J, Highlander SK, Fox GE, McNeill TZ, Jiang H, Muzny D, Jacob LS, Hawes AC, Sodergren E, Gill R, Hume J, Morgan M, Fan G, Amin AG, Gibbs RA, Hong C, Yu XJ, Walker DH, Weinstock GM. Complete genome sequence of Rickettsia typhi and comparison with sequences of other rickettsiae. J Bacteriol. 2004 Sep; 186(17):5842-55. PMID: 15317790; PMCID: PMC516817.
      View in: PubMed, PubMed Central
    69. Kourentzi KD, Fox GE, Willson RC. Hybridization-responsive fluorescent DNA probes containing the adenine analog 2-aminopurine. Anal Biochem. 2003 Nov 01; 322(1):124-6. PMID: 14705788.
      View in: PubMed
    70. Balan S, Murphy J, Galaev I, Kumar A, Fox GE, Mattiasson B, Willson RC. Metal chelate affinity precipitation of RNA and purification of plasmid DNA. Biotechnol Lett. 2003 Jul; 25(13):1111-6. PMID: 12889823.
      View in: PubMed
    71. D'Souza LM, Larios-Sanz M, Setterquist RA, Willson RC, Fox GE. Small RNA sequences are readily stabilized by inclusion in a carrier rRNA. Biotechnol Prog. 2003 May-Jun; 19(3):734-8. PMID: 12790632.
      View in: PubMed
    72. Murphy JC, Jewell DL, White KI, Fox GE, Willson RC. Nucleic acid separations utilizing immobilized metal affinity chromatography. Biotechnol Prog. 2003 May-Jun; 19(3):982-6. PMID: 12790665.
      View in: PubMed
    73. Nagaswamy U, Fox GE. RNA ligation and the origin of tRNA. Orig Life Evol Biosph. 2003 Apr; 33(2):199-209. PMID: 12967267.
      View in: PubMed
    74. DeWalt BW, Murphy JC, Fox GE, Willson RC. Compaction agent clarification of microbial lysates. Protein Expr Purif. 2003 Apr; 28(2):220-3. PMID: 12699684.
      View in: PubMed
    75. Murphy JC, Fox GE, Willson RC. Enhancement of anion-exchange chromatography of DNA using compaction agents. J Chromatogr A. 2003 Jan 17; 984(2):215-21. PMID: 12564692.
      View in: PubMed
    76. Zhang Z, D'Souza LM, Lee YH, Fox GE. Common 5S rRNA variants are likely to be accepted in many sequence contexts. J Mol Evol. 2003 Jan; 56(1):69-76. PMID: 12569424.
      View in: PubMed
    77. Martin KA, Siefert JL, Yerrapragada S, Lu Y, McNeill TZ, Moreno PA, Weinstock GM, Widger WR, Fox GE. Cyanobacterial signature genes. Photosynth Res. 2003; 75(3):211-21. PMID: 16228602.
      View in: PubMed
    78. Nagaswamy U, Fox GE. Frequent occurrence of the T-loop RNA folding motif in ribosomal RNAs. RNA. 2002 Sep; 8(9):1112-9. PMID: 12358430; PMCID: PMC1370325.
      View in: PubMed, PubMed Central
    79. Larkin DC, Williams AM, Martinis SA, Fox GE. Identification of essential domains for Escherichia coli tRNA(leu) aminoacylation and amino acid editing using minimalist RNA molecules. Nucleic Acids Res. 2002 May 15; 30(10):2103-13. PMID: 12000830; PMCID: PMC115294.
      View in: PubMed, PubMed Central
    80. Kourentzi KD, Fox GE, Willson RC. Microbial identification by immunohybridization assay of artificial RNA labels. J Microbiol Methods. 2002 May; 49(3):301-6. PMID: 11869795.
      View in: PubMed
    81. Zhang Z, Willson RC, Fox GE. Identification of characteristic oligonucleotides in the bacterial 16S ribosomal RNA sequence dataset. Bioinformatics. 2002 Feb; 18(2):244-50. PMID: 11847072.
      View in: PubMed
    82. Nagaswamy U, Larios-Sanz M, Hury J, Collins S, Zhang Z, Zhao Q, Fox GE. NCIR: a database of non-canonical interactions in known RNA structures. Nucleic Acids Res. 2002 Jan 01; 30(1):395-7. PMID: 11752347; PMCID: PMC99067.
      View in: PubMed, PubMed Central
    83. Nagaswamy U, Gao X, Martinis SA, Fox GE. NMR structure of a ribosomal RNA hairpin containing a conserved CUCAA pentaloop. Nucleic Acids Res. 2001 Dec 15; 29(24):5129-39. PMID: 11812846; PMCID: PMC97551.
      View in: PubMed, PubMed Central
    84. Larkin DC, Martinis SA, Roberts DJ, Fox GE. Ala-His mediated peptide bond formation revisited. Orig Life Evol Biosph. 2001 Dec; 31(6):511-26. PMID: 11770259.
      View in: PubMed
    85. Kourentzi KD, Fox GE, Willson RC. Microbial detection with low molecular weight RNA. Curr Microbiol. 2001 Dec; 43(6):444-7. PMID: 11685514.
      View in: PubMed
    86. Murphy JC, Fox GE, Willson RC. RNA isolation and fractionation with compaction agents. Anal Biochem. 2001 Aug 15; 295(2):143-8. PMID: 11488615.
      View in: PubMed
    87. Nease RF, Whitcup SM, Ellwein LB, Fox G, Littenberg B. Utility-based estimates of the relative morbidity of visual impairment and angina. Ophthalmic Epidemiol. 2000 Sep; 7(3):169-85. PMID: 11035553.
      View in: PubMed
    88. Siefert JL, Larios-Sanz M, Nakamura LK, Slepecky RA, Paul JH, Moore ER, Fox GE, Jurtshuk P. Phylogeny of marine Bacillus isolates from the Gulf of Mexico. Curr Microbiol. 2000 Aug; 41(2):84-8. PMID: 10856371.
      View in: PubMed
    89. Hedenstierna KO, Siefert JL, Fox GE, Murgola EJ. Co-conservation of rRNA tetraloop sequences and helix length suggests involvement of the tetraloops in higher-order interactions. Biochimie. 2000 Mar; 82(3):221-7. PMID: 10863005.
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    90. D'Souza LM, Willson RC, Fox GE. Expression of marker RNAs in Pseudomonas putida. Curr Microbiol. 2000 Feb; 40(2):91-5. PMID: 10594220.
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    91. Nagaswamy U, Voss N, Zhang Z, Fox GE. Database of non-canonical base pairs found in known RNA structures. Nucleic Acids Res. 2000 Jan 01; 28(1):375-6. PMID: 10592279; PMCID: PMC102435.
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    92. Murphy JC, Wibbenmeyer JA, Fox GE, Willson RC. Purification of plasmid DNA using selective precipitation by compaction agents. Nat Biotechnol. 1999 Aug; 17(8):822-3. PMID: 10429254.
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    93. Ammons D, Rampersad J, Fox GE. 5S rRNA gene deletions cause an unexpectedly high fitness loss in Escherichia coli. Nucleic Acids Res. 1999 Jan 15; 27(2):637-42. PMID: 9862991; PMCID: PMC148226.
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    94. Ammons D, Rampersad J, Fox GE. A genomically modified marker strain of Escherichia coli. Curr Microbiol. 1998 Nov; 37(5):341-6. PMID: 9767715.
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    95. Siefert JL, Fox GE. Phylogenetic mapping of bacterial morphology. Microbiology. 1998 Oct; 144 ( Pt 10):2803-8. PMID: 9802021.
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    96. Siefert JL, Martin KA, Abdi F, Widger WR, Fox GE. Conserved gene clusters in bacterial genomes provide further support for the primacy of RNA. J Mol Evol. 1997 Nov; 45(5):467-72. PMID: 9342394.
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    97. Lee YH, DSouza LM, Fox GE. Equally parsimonious pathways through an RNA sequence space are not equally likely. J Mol Evol. 1997 Sep; 45(3):278-84. PMID: 9302322.
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    98. Martinis SA, Fox GE. Non-standard amino acid recognition by Escherichia coli leucyl-tRNA synthetase. Nucleic Acids Symp Ser. 1997; 36:125-8. PMID: 11541249.
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    99. Pitulle C, Dsouza L, Fox GE. A low molecular weight artificial RNA of unique size with multiple probe target regions. Syst Appl Microbiol. 1997 Jan; 20(1):133-6. PMID: 11540055.
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    100. Setterquist RA, Smith GK, Oakley TH, Lee YH, Fox GE. Sequence, overproduction and purification of Vibrio proteolyticus ribosomal protein L18 for in vitro and in vivo studies. Gene. 1996 Dec 12; 183(1-2):237-42. PMID: 8996113.
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    101. Setterquist RA, Smith GK, Jones R, Fox GE. Diagnostic probes targeting the major sperm protein gene that may be useful in the molecular identification of nematodes. J Nematol. 1996 Dec; 28(4 Suppl):414-21. PMID: 11542511; PMCID: PMC2619710.
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    102. Yang Y, Fox GE. An Archaea 5S rRNA analog is stably expressed in Escherichia coli. Gene. 1996 Feb 02; 168(1):81-5. PMID: 8626070.
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    103. Smith GK, Jie J, Fox GE, Gao X. DNA CTG triplet repeats involved in dynamic mutations of neurologically related gene sequences form stable duplexes. Nucleic Acids Res. 1995 Nov 11; 23(21):4303-11. PMID: 7501450; PMCID: PMC307384.
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    104. Pitulle C, Hedenstierna KO, Fox GE. A novel approach for monitoring genetically engineered microorganisms by using artificial, stable RNAs. Appl Environ Microbiol. 1995 Oct; 61(10):3661-6. PMID: 7487004; PMCID: PMC167667.
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    105. Setterquist RA, Fox GE. Dictyocaulus viviparus: nucleotide sequence of Dv3-14. Int J Parasitol. 1995 Jan; 25(1):137-8. PMID: 7797366.
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    106. Pitulle C, Yang Y, Marchiani M, Moore ER, Siefert JL, Aragno M, Jurtshuk P, Fox GE. Phylogenetic position of the genus Hydrogenobacter. Int J Syst Bacteriol. 1994 Oct; 44(4):620-6. PMID: 7981093.
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    107. Lee YH, Dsouza L, Fox GE. Experimental investigation of an RNA sequence space. Orig Life Evol Biosph. 1993 Dec; 23(5-6):365-72. PMID: 7509477.
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    108. Hedenstierna KO, Lee YH, Yang Y, Fox GE. A prototype stable RNA identification cassette for monitoring plasmids of genetically engineered microorganisms. Syst Appl Microbiol. 1993; 16:280-6. PMID: 11539559.
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    109. Lazcano A, Valverde V, Hernández G, Gariglio P, Fox GE, Oró J. On the early emergence of reverse transcription: theoretical basis and experimental evidence. J Mol Evol. 1992 Dec; 35(6):524-36. PMID: 1282161.
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    110. Lee YH, Huang XY, Hirsh D, Fox GE, Hecht RM. Conservation of gene organization and trans-splicing in the glyceraldehyde-3-phosphate dehydrogenase-encoding genes of Caenorhabditis briggsae. Gene. 1992 Nov 16; 121(2):227-35. PMID: 1446820.
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    111. Jurtshuk RJ, Blick M, Bresser J, Fox GE, Jurtshuk P. Rapid in situ hybridization technique using 16S rRNA segments for detecting and differentiating the closely related gram-positive organisms Bacillus polymyxa and Bacillus macerans. Appl Environ Microbiol. 1992 Aug; 58(8):2571-8. PMID: 1381173; PMCID: PMC195823.
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    112. Wisotzkey JD, Jurtshuk P, Fox GE, Deinhard G, Poralla K. Comparative sequence analyses on the 16S rRNA (rDNA) of Bacillus acidocaldarius, Bacillus acidoterrestris, and Bacillus cycloheptanicus and proposal for creation of a new genus, Alicyclobacillus gen. nov. Int J Syst Bacteriol. 1992 Apr; 42(2):263-9. PMID: 1374624.
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    113. Fox GE, Wisotzkey JD, Jurtshuk P. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int J Syst Bacteriol. 1992 Jan; 42(1):166-70. PMID: 1371061.
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    114. Rössler D, Ludwig W, Schleifer KH, Lin C, McGill TJ, Wisotzkey JD, Jurtshuk P, Fox GE. Phylogenetic diversity in the genus Bacillus as seen by 16S rRNA sequencing studies. Syst Appl Microbiol. 1991; 14(3):266-9. PMID: 11538306.
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    115. Devereux R, Loeblich AR, Fox GE. Higher plant origins and the phylogeny of green algae. J Mol Evol. 1990 Jul; 31(1):18-24. PMID: 2116527.
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    116. Wisotzkey JD, Jurtshuk P, Fox GE. PCR amplification of 16S rDNA from lyophilized cell cultures facilitates studies in molecular systematics. Curr Microbiol. 1990; 21:325-7. PMID: 11538071.
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    117. Hadwiger MA, Fox GE. Distances as degrees of freedom. J Biomol Struct Dyn. 1989 Dec; 7(3):749-71. PMID: 2483316.
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    118. Trent DW, Grant JA, Monath TP, Manske CL, Corina M, Fox GE. Genetic variation and microevolution of dengue 2 virus in Southeast Asia. Virology. 1989 Oct; 172(2):523-35. PMID: 2529700.
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    119. Haselman T, Gutell RR, Jurka J, Fox GE. Additional Watson-Crick interactions suggest a structural core in large subunit ribosomal RNA. J Biomol Struct Dyn. 1989 Aug; 7(1):181-6. PMID: 2684221.
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    120. Haselman T, Camp DG, Fox GE. Phylogenetic evidence for tertiary interactions in 16S-like ribosomal RNA. Nucleic Acids Res. 1989 Mar 25; 17(6):2215-21. PMID: 2468130; PMCID: PMC317591.
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    121. Van den Eynde H, De Baere R, Shah HN, Gharbia SE, Fox GE, Michalik J, Van de Peer Y, De Wachter R. 5S ribosomal ribonucleic acid sequences in Bacteroides and Fusobacterium: evolutionary relationships within these genera and among eubacteria in general. Int J Syst Bacteriol. 1989 Jan; 39(1):78-84. PMID: 11542181.
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    122. Haselman T, Chappelear JE, Fox GE. Fidelity of secondary and tertiary interactions in tRNA. Nucleic Acids Res. 1988 Jun 24; 16(12):5673-84. PMID: 3387243; PMCID: PMC336792.
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    123. Mathrani IM, Boone DR, Mah RA, Fox GE, Lau PP. Methanohalophilus zhilinae sp. nov., an alkaliphilic, halophilic, methylotrophic methanogen. Int J Syst Bacteriol. 1988 Apr; 38(2):139-42. PMID: 11540079.
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    124. Gutell RR, Fox GE. A compilation of large subunit RNA sequences presented in a structural format. Nucleic Acids Res. 1988; 16 Suppl:r175-269. PMID: 3368328; PMCID: PMC340912.
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    125. Oren A, Lau PP, Fox GE. The taxonomic status of "Halobacterium marismortui" from the Dead Sea: a comparison with Halobacterium vallismortis. Syst Appl Microbiol. 1988; 10(3):251-8. PMID: 11538329.
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    126. Stackebrandt E, Ludwig W, Weizenegger M, Dorn S, McGill TJ, Fox GE, Woese CR, Schubert W, Schleifer KH. Comparative 16S rRNA oligonucleotide analyses and murein types of round-spore-forming bacilli and non-spore-forming relatives. J Gen Microbiol. 1987 Sep; 133(9):2523-9. PMID: 2452227.
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    127. Lau PP, DeBrunner-Vossbrinck B, Dunn B, Miotto K, MacDonnell MT, Rollins DM, Pillidge CJ, Hespell RB, Colwell RR, Sogin ML, Fox GE. Phylogenetic diversity and position of the genus Campylobacter. Syst Appl Microbiol. 1987; 9:231-8. PMID: 11542086.
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    128. Delihas N, Fox GE. Origins of the plant chloroplasts and mitochondria based on comparisons of 5S ribosomal RNAs. Ann N Y Acad Sci. 1987; 503:92-102. PMID: 11536580.
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    129. McGill TJ, Jurka J, Sobieski JM, Pickett MH, Woese CR, Fox GE. Characteristic archaebacterial 16S rRNA oligonucleotides. Syst Appl Microbiol. 1986; 7:194-7. PMID: 11542064.
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    130. Ludwig W, Seewaldt E, Kilpper-Bälz R, Schleifer KH, Magrum L, Woese CR, Fox GE, Stackebrandt E. The phylogenetic position of Streptococcus and Enterococcus. J Gen Microbiol. 1985 Mar; 131(3):543-51. PMID: 2410543.
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    131. Villanueva E, Luehrsen KR, Gibson J, Delihas N, Fox GE. Phylogenetic origins of the plant mitochondrion based on a comparative analysis of 5S ribosomal RNA sequences. J Mol Evol. 1985; 22:46-52. PMID: 11542018.
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    132. Luehrsen KR, Nicholson DE, Fox GE. Widespread distribution of a 7S RNA in archaebacteria. Curr Microbiol. 1985; 12:69-72. PMID: 11540841.
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    133. Woese CR, Stackebrandt E, Macke TJ, Fox GE. A phylogenetic definition of the major eubacterial taxa. Syst Appl Microbiol. 1985; 6:143-51. PMID: 11542017.
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    134. Daniels CJ, Hofman JD, MacWilliam JG, Doolittle WF, Woese CR, Luehrsen KR, Fox GE. Sequence of 5S ribosomal RNA gene regions and their products in the archaebacterium Halobacterium volcanii. Mol Gen Genet. 1985; 198(2):270-4. PMID: 3856725.
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    135. Deming JW, Hada H, Colwell RR, Luehrsen KR, Fox GE. The ribonucleotide sequence of 5s rRNA from two strains of deep-sea barophilic bacteria. J Gen Microbiol. 1984 Aug; 130(8):1911-20. PMID: 6206199.
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    136. Sobieski JM, Chen KN, Filiatreau JC, Pickett MH, Fox GE. 16S rRNA oligonucleotide catalog data base. Nucleic Acids Res. 1984 Jan 11; 12(1 Pt 1):141-8. PMID: 6694898; PMCID: PMC320991.
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    137. Woese CR, Stackebrandt E, Weisburg WG, Paster BJ, Madigan MT, Fowler VJ, Hahn CM, Blanz P, Gupta R, Nealson KH, Fox GE. The phylogeny of purple bacteria: the alpha subdivision. Syst Appl Microbiol. 1984; 5:315-26. PMID: 11541974.
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    138. Luehrsen KR, Nicholson DE, Eubanks DC, Fox GE. An archaebacterial 5S rRNA contains a long insertion sequence. Nature. 1981 Oct 29; 293(5835):755-6. PMID: 6169998.
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    139. Ludwig W, Schleifer KH, Fox GE, Seewaldt E, Stackebrandt E. A phylogenetic analysis of staphylococci, Peptococcus saccharolyticus and Micrococcus mucilaginosus. J Gen Microbiol. 1981 Aug; 125(2):357-66. PMID: 6172548.
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    140. Luehrsen KR, Fox GE. Secondary structure of eukaryotic cytoplasmic 5S ribosomal RNA. Proc Natl Acad Sci U S A. 1981 Apr; 78(4):2150-4. PMID: 6787600; PMCID: PMC319301.
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    141. Luehrsen KR, Fox GE, Kilpatrick MW, Walker RT, Domdey H, Krupp G, Gross HJ. The nucleotide sequence of the 5S rRNA from the archaebacterium Thermoplasma acidophilum. Nucleic Acids Res. 1981 Feb 25; 9(4):965-70. PMID: 7232209; PMCID: PMC326725.
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    142. Butler MH, Wall SM, Luehrsen KR, Fox GE, Hecht RM. Molecular relationships between closely related strains and species of nematodes. J Mol Evol. 1981; 18(1):18-23. PMID: 7334524.
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    143. Fox GE, Stackebrandt E, Hespell RB, Gibson J, Maniloff J, Dyer TA, Wolfe RS, Balch WE, Tanner RS, Magrum LJ, Zablen LB, Blakemore R, Gupta R, Bonen L, Lewis BJ, Stahl DA, Luehrsen KR, Chen KN, Woese CR. The phylogeny of prokaryotes. Science. 1980 Jul 25; 209(4455):457-63. PMID: 6771870.
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    144. Woese CR, Gibson J, Fox GE. Do genealogical patterns in purple photosynthetic bacteria reflect interspecific gene transfer? Nature. 1980 Jan 10; 283(5743):212-4. PMID: 6243180.
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    145. Bonen L, Doolittle WF, Fox GE. Cyanobacterial evolution: results of 16S ribosomal ribonucleic acid sequence analyses. Can J Biochem. 1979 Jun; 57(6):879-88. PMID: 113061.
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    146. Balch WE, Fox GE, Magrum LJ, Woese CR, Wolfe RS. Methanogens: reevaluation of a unique biological group. Microbiol Rev. 1979 Jun; 43(2):260-96. PMID: 390357; PMCID: PMC281474.
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    147. Woese CR, Magrum LJ, Fox GE. Archaebacteria. J Mol Evol. 1978 Aug 02; 11(3):245-51. PMID: 691075.
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    148. Tornabene TG, Wolfe RS, Balch WE, Holzer G, Fox GE, Oro J. Phytanyl-glycerol ethers and squalenes in the archaebacterium Methanobacterium thermoautotrophicum. J Mol Evol. 1978 Aug 02; 11(3):259-66. PMID: 691077.
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    149. Fox GE, Magrum LJ, Balch WE, Wolfe RS, Woese CR. Classification of methanogenic bacteria by 16S ribosomal RNA characterization. Proc Natl Acad Sci U S A. 1977 Oct; 74(10):4537-41. PMID: 16592452.
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    150. Woese CR, Fox GE. The concept of cellular evolution. J Mol Evol. 1977 Sep 20; 10(1):1-6. PMID: 903983.
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    151. Balch WE, Magrum LJ, Fox GE, Wolfe RS, Woese CR. An ancient divergence among the bacteria. J Mol Evol. 1977 Aug 05; 9(4):305-11. PMID: 408502.
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    152. Woese CR, Luehrsen KR, Pribula CD, Fox GE. Sequence characterization of 5S ribosomal RNA from eight gram positive procaryotes. J Mol Evol. 1976 Aug 03; 8(2):143-53. PMID: 823342.
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    153. Pribula CD, Fox GE, Woese CR. Nucleotide sequence of Clostridium pasteurianum 5S rRNA. FEBS Lett. 1976 May 01; 64(2):350-2. PMID: 1278390.
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    154. Fox GE, Woese CR. The architecture of 5S rRNA and its relation to function. J Mol Evol. 1975 Oct 03; 6(1):61-76. PMID: 1185796.
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    155. Fox GE, Woese CR. 5S RNA secondary structure. Nature. 1975 Aug 07; 256(5517):505-7. PMID: 808733.
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    156. Woese CR, Pribula CD, Fox GE, Zablen LB. The nucleotide sequence of the 5S ribosomal RNA from a photobacterium. J Mol Evol. 1975 Jun 09; 5(1):35-46. PMID: 1177325.
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    157. Woese CR, Fox GE, Zablen L, Uchida T, Bonen L, Pechman K, Lewis BJ, Stahl D. Conservation of primary structure in 16S ribosomal RNA. Nature. 1975 Mar 06; 254(5495):83-6. PMID: 1089909.
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    158. Pribula CD, Fox GE, Woese CR. Nucleotide sequence of Bacillus megaterium 5 S RNA. FEBS Lett. 1974 Aug 30; 44(3):322-3. PMID: 4213268.
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